1 Gene Set Enrichment Test
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0002181 | GO:0002181 | cytoplasmic translation | 90 | -0.6683392 | -2.450518 | 0.0000000 | 0.0000001 | 0.0000001 | 1931 | tags=46%, list=17%, signal=38% | Rpl29/Rpl35a/Nck1/Eif2d/Zfp385a/Rps21/Rps29/Rpl36al/Rplp0/Cpeb4/Eif5/Eif3i/Rpl18/Dph2/Dph3/Eif3d/Rpl36a/Rpl22l1/Tma7/Rpl26/Denr/Eif4a1/Eif3m/Eif2s3x/Rps26/Rpl38/Rpl6/Rpl32/Drg1/Rpl9/Rpl39/Cnbp/Rps2/Eef2/Dhx36/Gspt1/Etf1/Eif3a/Ythdf2/Eif4b/Rpl11 |
| GO:0071826 | GO:0071826 | ribonucleoprotein complex subunit organization | 161 | -0.5135810 | -2.047854 | 0.0000000 | 0.0000063 | 0.0000062 | 1844 | tags=35%, list=16%, signal=30% | Eif2d/Ddx20/Rps25/Rps19/Prmt5/Nle1/Prpf19/Coil/Sart3/Celf1/Rplp0/Rpl5/Prpf18/Srsf6/Rps14/Eif5/Rps5/Kif5b/Nufip1/Pwp2/Prpf6/Tfip11/Sf3b1/Snrpb/Mrto4/Srsf10/Eif3d/Prpf31/Mrpl20/Srsf1/Polr2d/Sfswap/Denr/Znhit3/Mrps11/Nop2/Eif2s3x/Luc7l2/Eif6/Sf3a3/Rpl38/Rpl6/Smn1/Bop1/Rpl23a/Brix1/Rps15/Rrs1/Puf60/Rps2/Clns1a/Rpl10/Nopchap1/Eif3a/Eif4b/Rpl11 |
| GO:0022618 | GO:0022618 | ribonucleoprotein complex assembly | 155 | -0.5200836 | -2.074743 | 0.0000000 | 0.0000089 | 0.0000088 | 1844 | tags=35%, list=16%, signal=30% | Eif2d/Ddx20/Rps25/Rps19/Prmt5/Nle1/Prpf19/Coil/Sart3/Celf1/Rplp0/Rpl5/Prpf18/Srsf6/Rps14/Eif5/Rps5/Nufip1/Pwp2/Prpf6/Sf3b1/Snrpb/Mrto4/Srsf10/Eif3d/Prpf31/Mrpl20/Srsf1/Polr2d/Sfswap/Denr/Znhit3/Mrps11/Nop2/Eif2s3x/Luc7l2/Eif6/Sf3a3/Rpl38/Rpl6/Smn1/Bop1/Rpl23a/Brix1/Rps15/Rrs1/Puf60/Rps2/Clns1a/Rpl10/Nopchap1/Eif3a/Eif4b/Rpl11 |
| GO:0019081 | GO:0019081 | viral translation | 16 | -0.8139109 | -2.076932 | 0.0000233 | 0.0071317 | 0.0070154 | 710 | tags=50%, list=6%, signal=47% | Eif3d/Eif2ak4/Denr/Eif3f/Csde1/Eif3b/Ptbp1/Eif3a |
| GO:1903320 | GO:1903320 | regulation of protein modification by small protein conjugation or removal | 202 | -0.4050349 | -1.672669 | 0.0000476 | 0.0116530 | 0.0114629 | 1632 | tags=24%, list=14%, signal=21% | Fyn/Mapk9/Sart3/Mul1/Pias1/Pias4/Bcl10/Hdac4/Rpl5/Sqstm1/Dcun1d3/Dcun1d2/Huwe1/Sprtn/Rnf20/Nsmce3/Bag5/U2af2/Gnl3l/Tollip/Gnl3/Ube2l3/Prkcg/Cdc20/Gtpbp4/Aimp2/Rassf5/Stub1/Spopl/Dcun1d1/Ubqln1/Ubxn2a/Rps3/Sae1/Otub1/Arrdc3/Derl1/Ubr5/Hspbp1/Trip12/Rps7/Rps2/Hspa5/Pttg1ip/Tnip1/Ripk2/Wdr48/Dnaja1/Rpl11 |
| GO:0060707 | GO:0060707 | trophoblast giant cell differentiation | 12 | 0.8392104 | 1.926353 | 0.0001179 | 0.0275225 | 0.0270735 | 1012 | tags=42%, list=9%, signal=38% | Snai1/Senp2/Prdm1/E2f7/Sox15 |
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0003735 | GO:0003735 | structural constituent of ribosome | 154 | -0.5567516 | -2.191037 | 0.0000000 | 0.0000001 | 0.0000001 | 1938 | tags=38%, list=17%, signal=32% | Mrpl28/Rpl29/Mrps7/Rpl35a/Rps25/Rps19/Dap3/Rps21/Rpl28/Rps29/Mrpl52/Rps24/Rpl36al/Rpl7a/Rplp0/Rpl5/Mrpl44/Rps14/Rps5/Mrpl16/Rps6/Rpl18/Mrps18c/Mrpl54/Rpl7l1/Rps10/Rps20/Rpl36a/Rpl22l1/Mrpl20/Rpl13/Rpl26/Mrps11/Rps11/Rps26/Rps3/Uba52/Rps13/Rpl38/Mrpl46/Rps9/Rpl6/Rpl32/Rpl9/Rpl23a/Mrpl21/Rpl39/Rps15/Mrpl19/Mrpl1/Rps7/Rps2/Rps15a/Rpl4/Rpl10/Rpl12/Rsl24d1/Rpl11 |
| GO:0019843 | GO:0019843 | rRNA binding | 70 | -0.6377816 | -2.198352 | 0.0000000 | 0.0000112 | 0.0000107 | 1163 | tags=37%, list=10%, signal=34% | Rplp0/Rpl5/Rps14/Rps5/Mrpl16/Kdm2b/Emg1/Mrps18c/Mrpl20/Mrps11/Rps11/Rps3/Rps13/Imp4/Rps9/Rpl6/Rpl9/Eri1/Rpl23a/Brix1/Ddx21/Rrs1/Eef2/Rpl4/Rpl12/Rpl11 |
| GO:0045182 | GO:0045182 | translation regulator activity | 122 | -0.5317277 | -2.013088 | 0.0000001 | 0.0000232 | 0.0000222 | 1395 | tags=34%, list=12%, signal=30% | Cpeb4/Eif4e3/Ctif/Abcf1/Rps14/Eif5/Eif3i/Eef1a1/Pcbp1/Eif2ak3/Eif4g2/Eif3d/Eif2ak4/Eif1b/Paip2/Tufm/Denr/Eif4a1/Eif3m/Eif2s3x/Fxr2/Patl2/Eif6/Eif3f/Eif1ax/Larp1/Rps9/Eif2b4/Cnbp/Eif3b/Eif3c/Eef2/Gspt1/Rpl10/Eef1d/Etf1/Eif4e/Eif3a/Eif4a3/Eif2b1/Eif4b |
| GO:0090079 | GO:0090079 | translation regulator activity, nucleic acid binding | 95 | -0.5461885 | -2.018781 | 0.0000008 | 0.0001360 | 0.0001299 | 1395 | tags=34%, list=12%, signal=30% | Cpeb4/Eif4e3/Ctif/Abcf1/Eif5/Eif3i/Eef1a1/Pcbp1/Eif4g2/Eif3d/Eif1b/Paip2/Tufm/Denr/Eif4a1/Eif3m/Eif2s3x/Eif6/Eif3f/Eif1ax/Larp1/Eif2b4/Eif3b/Eif3c/Eef2/Gspt1/Eef1d/Etf1/Eif4e/Eif3a/Eif2b1/Eif4b |
| GO:0140640 | GO:0140640 | catalytic activity, acting on a nucleic acid | 477 | -0.3163066 | -1.421480 | 0.0001440 | 0.0136506 | 0.0130382 | 1663 | tags=20%, list=15%, signal=18% | Ddx1/Nsun5/Nme1/Chd7/Qrsl1/Zranb3/Cnot7/Ddx4/Trmt11/Lig4/Henmt1/Polr2k/Ddx56/Ddx59/Dhx15/Rfc5/Ighmbp2/Ercc5/Mars2/Ptrh1/Polg/Qars/Mrpl44/Rad51/Usb1/Farsb/Polr3e/Tdp2/Rbbp4/Vars/Ddx19a/Exo1/Eri3/Pop7/Emg1/Lrrc47/Zc3h12d/Smg6/Tyw1/Pop1/Ddx24/Gtf2f2/Polr1d/Dus2/Eri2/Polr1e/Isg20/Noct/Dtwd2/Atrx/Ercc6l2/Mutyh/Polr2d/Fbl/Dhx16/Jmjd6/Polr3b/Pold3/Cmtr2/Mettl2/Polr3c/Pop4/Tut7/Sepsecs/Eif4a1/Nob1/Nop2/Rars/Snd1/Chtf18/Rps3/Trit1/Polr3d/Rars2/Smarca2/Zc3h12b/Ddx52/Hars/Eri1/Ddx54/Dis3/Polr2e/Trnt1/Ddx21/Ddx51/Atad5/Ung/Chd5/Rcl1/Ddx10/Ptbp1/Dkc1/Dhx40/Dhx36/Ern1/Smc3/Eif4a3 |
| GO:0004601 | GO:0004601 | peroxidase activity | 23 | 0.7093678 | 1.877820 | 0.0002868 | 0.0244630 | 0.0233656 | 1065 | tags=39%, list=9%, signal=36% | Prxl2b/Gpx3/Prdx6/Gpx6/Hba-a1/Txndc17/Prdx3/Gpx1/Prdx2 |
| GO:0140098 | GO:0140098 | catalytic activity, acting on RNA | 310 | -0.3460146 | -1.485572 | 0.0004109 | 0.0292059 | 0.0278958 | 1663 | tags=24%, list=15%, signal=21% | Ddx1/Nsun5/Qrsl1/Cnot7/Ddx4/Trmt11/Henmt1/Polr2k/Ddx56/Ddx59/Dhx15/Ighmbp2/Mars2/Ptrh1/Qars/Mrpl44/Usb1/Farsb/Polr3e/Tdp2/Vars/Ddx19a/Eri3/Pop7/Emg1/Lrrc47/Zc3h12d/Smg6/Tyw1/Pop1/Ddx24/Polr1d/Dus2/Eri2/Polr1e/Isg20/Noct/Dtwd2/Polr2d/Fbl/Dhx16/Jmjd6/Polr3b/Cmtr2/Mettl2/Polr3c/Pop4/Tut7/Sepsecs/Eif4a1/Nob1/Nop2/Rars/Snd1/Trit1/Polr3d/Rars2/Zc3h12b/Ddx52/Hars/Eri1/Ddx54/Dis3/Polr2e/Trnt1/Ddx21/Ddx51/Rcl1/Ddx10/Dhx40/Dhx36/Ern1/Eif4a3 |
| GO:0051082 | GO:0051082 | unfolded protein binding | 74 | -0.4853480 | -1.708574 | 0.0005271 | 0.0345834 | 0.0330320 | 730 | tags=31%, list=6%, signal=29% | Cct8/Heatr3/Dnajb1/Cryaa/Cct4/Pfdn6/Srsf10/Naca/Aip/Canx/Pfdn4/Dnajb4/Dnajb11/Ccdc115/Ube4b/Clpx/Cct6a/Dnaja2/Hspa5/Ern1/Grpel1/Dnajb6/Dnaja1 |
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0030684 | GO:0030684 | preribosome | 78 | -0.6544284 | -2.321194 | 0.0000000 | 0.0000002 | 0.0000002 | 1318 | tags=36%, list=12%, signal=32% | Wdr12/Dcaf13/Riox1/Noc4l/Emg1/Mphosph10/Pwp2/Rrp9/Mrto4/Ltv1/Fbl/Las1l/Nob1/Nop14/Nol6/Eif6/Bms1/Imp4/Pin4/Bop1/Rsl1d1/Rrs1/Rps7/Srfbp1/Utp4/Utp14a/Zfp622/Utp18 |
| GO:0010494 | GO:0010494 | cytoplasmic stress granule | 62 | -0.5351470 | -1.812604 | 0.0005355 | 0.0259531 | 0.0249341 | 1663 | tags=34%, list=15%, signal=29% | Ddx1/Pabpc1/Celf1/Kpna2/Ddx19a/Atxn2/G3bp2/Kpnb1/Pabpc1l/Stau1/Hnrnpk/Rc3h1/Caprin1/Tial1/Larp1/Gigyf2/Dhx36/Eif4e/Larp4/Ybx1/Ythdf2 |
| GO:0030137 | GO:0030137 | COPI-coated vesicle | 27 | -0.6576056 | -1.850274 | 0.0007753 | 0.0348904 | 0.0335204 | 1298 | tags=41%, list=11%, signal=36% | Actr1a/Use1/Copb2/Sec22b/Copa/Golga5/Copg2/Ccdc115/Arcn1/Tmed10/Smn1 |
| GO:0005852 | GO:0005852 | eukaryotic translation initiation factor 3 complex | 16 | -0.7508697 | -1.909921 | 0.0010061 | 0.0422543 | 0.0405951 | 1074 | tags=44%, list=9%, signal=40% | Eif3i/Eif3d/Eif3m/Eif3f/Eif3b/Eif3c/Eif3a |
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0002181 | GO:0002181 | cytoplasmic translation | 90 | -0.7002263 | -2.557501 | 0.0000000 | 0.0000001 | 0.0000001 | 986 | tags=37%, list=9%, signal=34% | Eif5/Rpl36a/Eif2b3/Rpl19/Dph3/Drg1/Rplp0/Gspt1/Tma7/Rpl39/Rplp2/Eif4a1/Rpl38/Rplp1/Eif2s3x/Eif3a/Rpl22l1/Rpl18/Eif3d/Etf1/Eif3m/Eif4b/Rpl36/Ythdf2/Rpl15/Rpl26/Rpl13a/Dhx36/Rpl9/Rps26/Rpl11/Cnbp/Rps2 |
| GO:0022618 | GO:0022618 | ribonucleoprotein complex assembly | 155 | -0.6054802 | -2.432134 | 0.0000000 | 0.0000001 | 0.0000001 | 1335 | tags=33%, list=12%, signal=29% | Khdc4/Abt1/Rpsa/Mrpl20/Strap/Smn1/Sf3b1/Eif5/Prpf31/Gemin8/Fastkd2/Rbm5/Prpf19/Rrs1/Rplp0/Srpk1/Celf1/Nufip1/Snrpd2/Rps25/Znhit3/Rpl38/Eif2s3x/Nopchap1/Mrto4/Nop53/Eif3a/Polr2d/Bop1/Sfswap/Prpf18/Brix1/Eif3d/Rpl23a/Eif4b/Rps27l/Rps14/Sf3a3/Rpl5/Rps15/Prpf6/Srsf1/Mrps11/Rpl13a/Rps19/Rps5/Puf60/Rpl10/Clns1a/Rpl11/Rps2 |
| GO:0071826 | GO:0071826 | ribonucleoprotein complex subunit organization | 161 | -0.5983589 | -2.410240 | 0.0000000 | 0.0000001 | 0.0000001 | 1648 | tags=37%, list=14%, signal=32% | Rpl6/Nop2/Ago2/Snrnp200/Tfip11/Snu13/Dhx8/Ptges3/Khdc4/Abt1/Rpsa/Mrpl20/Strap/Smn1/Sf3b1/Eif5/Prpf31/Gemin8/Fastkd2/Rbm5/Prpf19/Rrs1/Rplp0/Srpk1/Celf1/Nufip1/Snrpd2/Rps25/Znhit3/Rpl38/Eif2s3x/Nopchap1/Mrto4/Nop53/Eif3a/Polr2d/Bop1/Sfswap/Prpf18/Brix1/Eif3d/Rpl23a/Eif4b/Rps27l/Rps14/Sf3a3/Rpl5/Kif5b/Rps15/Prpf6/Srsf1/Mrps11/Rpl13a/Rps19/Rps5/Puf60/Rpl10/Clns1a/Rpl11/Rps2 |
| GO:0140694 | GO:0140694 | non-membrane-bounded organelle assembly | 303 | -0.3760507 | -1.619571 | 0.0000116 | 0.0043815 | 0.0042714 | 1519 | tags=23%, list=13%, signal=21% | Tmod3/Cltc/Srf/Cep63/Pls1/Racgap1/Vps4b/Mrps2/Ccnb2/Abt1/Rpsa/Edc3/Csde1/Efl1/Npm1/Mrpl20/Cnot1/Cenps/Prkar1a/Zfyve1/Tasor/Fastkd2/Smc1a/Kat2b/Neb/Drg1/Ino80/Rrs1/Rplp0/Sbds/C1qbp/Haus3/Pla2g4c/Mybl2/Dync1h1/Rps25/Chmp2a/Rpl38/Prc1/Kif11/Mrto4/Map9/Cnot7/Nop53/Prox1/Bop1/Brix1/Rpl23a/Rhoa/Rps27l/Rttn/Rps14/Ythdf2/Tpx2/Rps3/Patl2/Rpl5/Mapre1/Rps15/Incenp/Mrps11/Lsm14a/Cfl2/Rps19/Aup1/Zfp207/Smc3/Rps5/Rpl10/Rpl11/Rps2 |
| GO:1903320 | GO:1903320 | regulation of protein modification by small protein conjugation or removal | 202 | -0.4045163 | -1.679009 | 0.0000314 | 0.0077418 | 0.0075473 | 1279 | tags=21%, list=11%, signal=19% | Dysf/Prkcg/Mta1/Stub1/Nsmce3/Npm1/Nod2/Chp1/Ube2s/Huwe1/Derl1/Pias4/Rpl23/Wdr48/U2af2/Gnl3l/Gps2/Rassf5/Ube2l3/Gtpbp4/Dcun1d1/Rnf20/Otub1/Mad2l1/Nop53/Dcun1d2/Aimp2/Mad2l2/Arrdc3/Ubqln1/Pttg1ip/Rps7/Rps3/Tnip1/Ubxn2a/Rpl5/Hspa5/Ripk2/Gnl3/Rpl11/Ppia/Rps2/Dnaja1 |
| GO:1903311 | GO:1903311 | regulation of mRNA metabolic process | 230 | -0.3893928 | -1.637935 | 0.0000411 | 0.0093254 | 0.0090912 | 1274 | tags=23%, list=11%, signal=21% | Hnrnpm/Rbm25/Gtpbp1/Npm1/Cnot1/Qk/Ybx1/Khsrp/Rbm10/Cacng7/Rbm15b/Exosc3/Tut7/Cnot3/Nbas/Fastkd2/Zbtb7a/Rbm5/Prpf19/Srpk1/Hnrnpa0/C1qbp/Jmjd6/U2af2/Btg2/Celf1/Srsf2/Iws1/Snw1/Nup98/Rnf20/Cnot7/Myef2/Polr2d/Sfswap/Supt5/Ythdf2/Papola/Ccnb1/Pabpc1/Sf1/Larp1/Patl2/Ptbp1/Srsf1/Fxr2/Tra2b/Eif4a3/Dhx36/Gigyf2/Paf1/Puf60 |
| GO:0006403 | GO:0006403 | RNA localization | 149 | -0.4361235 | -1.741979 | 0.0000741 | 0.0145170 | 0.0141523 | 1450 | tags=28%, list=13%, signal=24% | Mrpl18/Sarnp/Igf2bp3/Setd2/Nup35/Nxf1/Nup37/Exosc10/Npm1/Qk/Ybx1/Khsrp/Sec13/Pom121/Thoc1/Chtop/Rbm15b/Nop58/Exosc3/Thoc7/Cct4/Snupn/Nol6/Iws1/Znhit3/Tcp1/Nup98/Nup54/Polr2d/Prpf18/Cct2/Fbl/Dkc1/Ssb/Thoc2/Thoc3/Nsun2/Prpf6/Srsf1/Slbp/Dhx36 |
| GO:0009060 | GO:0009060 | aerobic respiration | 129 | -0.4486277 | -1.752115 | 0.0001087 | 0.0190280 | 0.0185501 | 2243 | tags=33%, list=20%, signal=26% | Ndufs3/Adsl/Coq9/Idh3a/Cox7a2l/Ndufa12/Ppif/Hif1a/Atp5h/ND1/Atp5e/Akt1/Idh1/Suclg2/ND4/Idh3b/Cox7a2/Dguok/Tefm/Ireb2/Ndufc2/Cs/ND5/Sdhd/Sdhb/Cox7c/Ide/Atp5c1/Cdk1/Nop53/Uqcr10/Iscu/Rhoa/COX1/ND6/Bnip3/Mdh2/Atp5pb/Ccnb1/Cox4i1/Atp5a1/Idh3g |
| GO:0010608 | GO:0010608 | posttranscriptional regulation of gene expression | 406 | -0.3317389 | -1.470497 | 0.0001195 | 0.0201872 | 0.0196801 | 1832 | tags=23%, list=16%, signal=20% | Eif1/Rgs2/Axin2/Dnajc3/Pum3/Elavl1/Akt1/Taf15/Gle1/Rc3h1/Ago2/Eif2s1/Bank1/Paip2/Henmt1/Mief1/Tent5c/Sarnp/Igf2bp3/Eif4e/Traf2/Pus7/Srrt/Ppp3ca/Hnrnpm/Atg14/Ireb2/Zfp706/Npm1/Cnot1/Paip1/Qk/Ybx1/Khsrp/Eif5/Eif2ak4/Rbm4b/Rbm10/Cacng7/Rps3a1/Kbtbd8/Exosc3/Spout1/Uhmk1/Tut7/Cnot3/Eif3b/Fastkd2/Abcf1/Slc35a4/Dph3/Matr3/Hnrnpa0/C1qbp/Gspt1/Larp4/Mapk1/Piwil1/Btg2/Celf1/Ptafr/Rpl38/Rplp1/Ppp1r15a/Eif2s3x/Cnot7/Dgcr8/Myef2/Polr2d/Eif3d/Etf1/Dkc1/Rps27l/Ythdf2/Ncor2/Rps3/Rpl26/Pabpc1/Nsun2/Larp1/Patl2/Rpl5/Rps9/Srsf1/Fxr2/Ilf3/Rpl13a/Eif4a3/Dhx36/Lsm14a/Gigyf2/Rpl10/Pa2g4/Cnbp |
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0019843 | GO:0019843 | rRNA binding | 70 | -0.6692262 | -2.400499 | 0.0000000 | 0.0000015 | 0.0000015 | 1263 | tags=46%, list=11%, signal=41% | Imp4/Npm1/Mrpl20/Ddx21/Rpl7/Rps4x/Mrps18c/Kdm2b/Fastkd2/Rpl19/Mrps18a/Mdm2/Rrs1/Rplp0/Rpl23/Sbds/Nop53/Brix1/Rpl23a/Rps18/Rps11/Rps14/Rps3/Rpl5/Rps13/Rps9/Rpl4/Mrps11/Rpl9/Rps5/Rpl12/Rpl11 |
| GO:0055106 | GO:0055106 | ubiquitin-protein transferase regulator activity | 21 | -0.7368272 | -2.054595 | 0.0001961 | 0.0278782 | 0.0273501 | 631 | tags=38%, list=6%, signal=36% | Rpl23/Ube2l3/Rps7/Rpl5/Rps20/Rps15/Aup1/Rpl11 |
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0030684 | GO:0030684 | preribosome | 78 | -0.5931837 | -2.11684 | 1.2e-06 | 9.24e-05 | 8.62e-05 | 2223 | tags=49%, list=19%, signal=40% | Ebna1bp2/Eif6/Fbxw9/Rrp9/Ppan/Ltv1/Riok3/Bms1/Snu13/Rrp36/Riok2/Imp4/Rrp1b/Noc4l/Mphosph10/Utp20/Rsl1d1/Nop58/Srfbp1/Mak16/Tsr1/Rrs1/Nob1/Nop14/Nop56/Nol6/Utp14a/Pes1/Utp4/Mrto4/Bop1/Fbl/Zfp622/Utp18/Rps7/Fcf1/Las1l/Pin4 |
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues |
|---|
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0003735 | GO:0003735 | structural constituent of ribosome | 154 | -0.4795526 | -1.911388 | 2e-07 | 0.0001801 | 0.0001801 | 2015 | tags=34%, list=18%, signal=28% | Mrpl13/Rps3a1/Mrps30/Rps25/Rps16/Mrps2/Mrps14/Rpl9/Rpsa/Mrps18b/Rpl22/Mrpl4/Mrpl35/Mrpl14/Mrpl41/Rps14/Rplp2/Rps20/Rplp1/Mrpl49/Mrpl12/Rpl30/Rpl19/Rpl23/Rpl14/Mrps11/Mrpl57/Rpl28/Rpl27a/Rps10/Rpl5/Rps27a/Rps4x/Mrpl33/Rps2/Rpl34/Rps17/Rps26/Rpl18a/Ndufa7/Rps12/Mrps17/Rpl15/Rps5/Rpl36/Rps18/Rps15a/Rpl3/Rps27l/Rps19/Rpl7/Rpl13a |
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GO:0044391 | GO:0044391 | ribosomal subunit | 180 | -0.4368014 | -1.807233 | 2.90e-06 | 0.0018205 | 0.0016912 | 2118 | tags=33%, list=18%, signal=28% | Zcchc17/Mrps18a/Mrpl13/Rps3a1/Mrps28/Mrps30/Rps25/Rps16/Mrps2/Mrps14/Rpl9/Nsun4/Rpsa/Mrps18b/Rpl22/Mrpl4/Mrpl35/Mrpl14/Mrpl41/Rps14/Rack1/Rplp2/Rps20/Rplp1/Mrpl49/Mrpl12/Rpl30/Mrpl58/Rpl19/Rpl23/Rpl14/Mrps11/Mief1/Mrpl57/Ndufab1/Rpl28/Rpl27a/Rps10/Rpl5/Rps27a/Rps4x/Mrpl33/Rps2/Rps17/Npm1/Rps26/Rpl18a/Rps12/Mrps17/Rpl15/Rps5/Rpl36/Rps18/Mrpl40/Rps15a/Rpl3/Rps27l/Rps19/Rpl7/Rpl13a |
| GO:0022626 | GO:0022626 | cytosolic ribosome | 101 | -0.4801216 | -1.822271 | 4.19e-05 | 0.0132079 | 0.0122700 | 1243 | tags=30%, list=11%, signal=27% | Rplp2/Rps20/Rplp1/Rpl30/Rpl19/Rpl23/Rpl14/Mrps11/Rpl28/Rpl27a/Rps10/Rpl5/Rps27a/Rps4x/Rps2/Rpl34/Rps17/Rps26/Rpl18a/Rps12/Rpl15/Rps5/Rpl36/Rps18/Rps15a/Rpl3/Rps27l/Rps19/Rpl7/Rpl13a |
2 Combined GSEA plot
sessionInfo()## R version 4.1.3 (2022-03-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.6 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=it_IT.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=it_IT.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=it_IT.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=it_IT.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] tidytext_0.3.4 DOSE_3.20.1
## [3] GOSemSim_2.20.0 enrichplot_1.14.2
## [5] org.Mm.eg.db_3.14.0 AnnotationDbi_1.56.2
## [7] clusterProfiler_4.2.2 data.table_1.14.6
## [9] vsn_3.62.0 ggrepel_0.9.2
## [11] ggplot2_3.4.0 DESeq2_1.34.0
## [13] SummarizedExperiment_1.24.0 Biobase_2.54.0
## [15] MatrixGenerics_1.6.0 matrixStats_0.62.0
## [17] GenomicRanges_1.46.1 GenomeInfoDb_1.30.1
## [19] IRanges_2.28.0 S4Vectors_0.32.4
## [21] BiocGenerics_0.40.0
##
## loaded via a namespace (and not attached):
## [1] shadowtext_0.1.2 fastmatch_1.1-3 plyr_1.8.8
## [4] igraph_1.3.5 lazyeval_0.2.2 splines_4.1.3
## [7] BiocParallel_1.28.3 SnowballC_0.7.0 digest_0.6.30
## [10] yulab.utils_0.0.5 htmltools_0.5.3 viridis_0.6.2
## [13] GO.db_3.14.0 fansi_1.0.3 magrittr_2.0.3
## [16] memoise_2.0.1 limma_3.50.3 Biostrings_2.62.0
## [19] annotate_1.72.0 graphlayouts_0.8.3 colorspace_2.0-3
## [22] blob_1.2.3 xfun_0.35 dplyr_1.0.10
## [25] crayon_1.5.2 RCurl_1.98-1.9 jsonlite_1.8.3
## [28] scatterpie_0.1.8 genefilter_1.76.0 survival_3.2-13
## [31] ape_5.6-2 glue_1.6.2 polyclip_1.10-4
## [34] gtable_0.3.1 zlibbioc_1.40.0 XVector_0.34.0
## [37] DelayedArray_0.20.0 scales_1.2.1 DBI_1.1.3
## [40] Rcpp_1.0.9 viridisLite_0.4.1 xtable_1.8-4
## [43] gridGraphics_0.5-1 tidytree_0.4.1 bit_4.0.5
## [46] preprocessCore_1.56.0 httr_1.4.4 fgsea_1.20.0
## [49] RColorBrewer_1.1-3 pkgconfig_2.0.3 XML_3.99-0.12
## [52] farver_2.1.1 sass_0.4.2 locfit_1.5-9.6
## [55] utf8_1.2.2 labeling_0.4.2 ggplotify_0.1.0
## [58] tidyselect_1.2.0 rlang_1.0.6 reshape2_1.4.4
## [61] munsell_0.5.0 tools_4.1.3 cachem_1.0.6
## [64] downloader_0.4 cli_3.4.1 generics_0.1.3
## [67] RSQLite_2.2.18 evaluate_0.18 stringr_1.4.1
## [70] fastmap_1.1.0 yaml_2.3.6 ggtree_3.2.1
## [73] knitr_1.40 bit64_4.0.5 tidygraph_1.2.2
## [76] purrr_0.3.5 KEGGREST_1.34.0 ggraph_2.1.0
## [79] nlme_3.1-155 aplot_0.1.8 DO.db_2.9
## [82] tokenizers_0.2.3 compiler_4.1.3 rstudioapi_0.14
## [85] png_0.1-7 affyio_1.64.0 treeio_1.18.1
## [88] tibble_3.1.8 tweenr_2.0.2 geneplotter_1.72.0
## [91] bslib_0.4.1 stringi_1.7.8 highr_0.9
## [94] lattice_0.20-45 Matrix_1.5-3 vctrs_0.5.1
## [97] pillar_1.8.1 lifecycle_1.0.3 BiocManager_1.30.22
## [100] jquerylib_0.1.4 bitops_1.0-7 patchwork_1.1.2
## [103] qvalue_2.26.0 R6_2.5.1 affy_1.72.0
## [106] gridExtra_2.3 janeaustenr_1.0.0 codetools_0.2-18
## [109] MASS_7.3-55 assertthat_0.2.1 withr_2.5.0
## [112] GenomeInfoDbData_1.2.7 parallel_4.1.3 grid_4.1.3
## [115] prettydoc_0.4.1 ggfun_0.0.8 tidyr_1.2.1
## [118] rmarkdown_2.18 ggforce_0.4.1