This is an immunology-epigenetics project between the Boulard lab at EMBL Rome and the Storck lab at Institut Necker Enfants-Malades in Paris.
Reference: [paper in preparation]
This website shows the results of the analysis of EMSeq data in Naive (time 0) and Germinal Center (day 7 and day 14 of GC reaction) B cells with conditional pro-B cells knock-out of the HELLS gene mouse homologue Lsh.
Content
The genome-wide DNA methylation main analysis is in Analysis
Methylation of Transposable Elements (TE) is specifically analysed in TE Analysis
The correlation between methylation loss and expression of single copy genes is in Meth Expr Corr
Repository of the project with source code is here.
For the same project, the analysis of Transposable Elements expression from RNASeq data is here and the source code here.
Results
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